
####################################################################

cadscore-lt \
  -t "./input/T0860o.pdb" \
  -m "./input/T0860TS203_1o" \
  --subselect-contacts "[-inter-chain]" \
  --output-dir ./results_basic \
  --local-output-formats pdb contactmap graphics-pymol \
| column -t
target      model          t_id  m_id  residue_residue_cadscore
T0860o.pdb  T0860TS203_1o  1     0     0.032812

####################################################################

cadscore-lt \
  -t "./input/T0860o.pdb" \
  -m "./input/T0860TS203_1o" \
  --subselect-contacts "[-inter-chain]" \
  --remap-chains \
  --output-dir ./results_after_remapping \
  --local-output-formats pdb contactmap graphics-pymol \
| column -t
target      model          t_id  m_id  residue_residue_cadscore  renaming_of_model_chains
T0860o.pdb  T0860TS203_1o  1     0     0.397704                  A=B,B=A,C=C

####################################################################

cadscore-lt \
  -t "./input/T0860o.pdb" \
  -m "./input/T0860TS203_1o" \
  --split-input-into-dimers \
  --subselect-contacts "[-inter-chain]" \
  --remap-chains \
  --output-dir ./results_for_subdimers \
| column -t
target                    model                        t_id  m_id  residue_residue_cadscore  renaming_of_model_chains
T0860o.pdb__subdimer_B_C  T0860TS203_1o__subdimer_A_C  5     1     0.392678                  A=B,C=C
T0860o.pdb__subdimer_B_C  T0860TS203_1o__subdimer_B_C  5     2     0.392678                  B=C,C=B
T0860o.pdb__subdimer_B_C  T0860TS203_1o__subdimer_A_B  5     0     0.392678                  A=C,B=B
T0860o.pdb__subdimer_A_B  T0860TS203_1o__subdimer_A_B  3     0     0.392678                  A=B,B=A
T0860o.pdb__subdimer_A_B  T0860TS203_1o__subdimer_A_C  3     1     0.392678                  A=A,C=B
T0860o.pdb__subdimer_A_C  T0860TS203_1o__subdimer_A_C  4     1     0.392678                  A=C,C=A
T0860o.pdb__subdimer_A_B  T0860TS203_1o__subdimer_B_C  3     2     0.392678                  B=B,C=A
T0860o.pdb__subdimer_A_C  T0860TS203_1o__subdimer_A_B  4     0     0.392678                  A=A,B=C
T0860o.pdb__subdimer_A_C  T0860TS203_1o__subdimer_B_C  4     2     0.392678                  B=A,C=C

####################################################################

cadscore-lt \
  -t "./input/T0860o.pdb" \
  -m "./input/T0860TS203_1o" \
  --fake-split-input-into-dimers \
  --subselect-contacts "[-inter-chain]" \
  --remap-chains \
  --output-dir ./results_for_fake_subdimers \
| column -t
target                    model                        t_id  m_id  residue_residue_cadscore  renaming_of_model_chains
T0860o.pdb__subdimer_B_C  T0860TS203_1o__subdimer_A_C  5     1     0.397704                  A=B,B=A,C=C
T0860o.pdb__subdimer_B_C  T0860TS203_1o__subdimer_A_B  5     0     0.397704                  A=C,B=B,C=A
T0860o.pdb__subdimer_A_C  T0860TS203_1o__subdimer_A_B  4     0     0.397704                  A=A,B=C,C=B
T0860o.pdb__subdimer_A_C  T0860TS203_1o__subdimer_A_C  4     1     0.397704                  A=C,B=B,C=A
T0860o.pdb__subdimer_B_C  T0860TS203_1o__subdimer_B_C  5     2     0.397704                  A=A,B=C,C=B
T0860o.pdb__subdimer_A_B  T0860TS203_1o__subdimer_A_B  3     0     0.397704                  A=B,B=A,C=C
T0860o.pdb__subdimer_A_B  T0860TS203_1o__subdimer_A_C  3     1     0.397704                  A=A,B=C,C=B
T0860o.pdb__subdimer_A_C  T0860TS203_1o__subdimer_B_C  4     2     0.397704                  A=B,B=A,C=C
T0860o.pdb__subdimer_A_B  T0860TS203_1o__subdimer_B_C  3     2     0.397704                  A=C,B=B,C=A

####################################################################

cadscore-lt \
  -m "./input/T0860TS203_1o" \
  --split-input-into-dimers \
  --subselect-contacts "[-inter-chain]" \
  --remap-chains \
  --clustering-thresholds 0.8 \
  --output-dir ./results_for_subdimers_self_clustering \
| column -t
target                       model                        t_id  m_id  residue_residue_cadscore  renaming_of_model_chains
T0860TS203_1o__subdimer_A_B  T0860TS203_1o__subdimer_A_B  0     0     1                         A=A,B=B
T0860TS203_1o__subdimer_A_C  T0860TS203_1o__subdimer_A_C  1     1     1                         A=A,C=C
T0860TS203_1o__subdimer_B_C  T0860TS203_1o__subdimer_B_C  2     2     1                         B=B,C=C
T0860TS203_1o__subdimer_B_C  T0860TS203_1o__subdimer_A_B  2     0     1                         A=B,B=C
T0860TS203_1o__subdimer_A_B  T0860TS203_1o__subdimer_B_C  0     2     1                         B=A,C=B
T0860TS203_1o__subdimer_A_C  T0860TS203_1o__subdimer_A_B  1     0     1                         A=C,B=A
T0860TS203_1o__subdimer_A_B  T0860TS203_1o__subdimer_A_C  0     1     1                         A=B,C=A
T0860TS203_1o__subdimer_B_C  T0860TS203_1o__subdimer_A_C  2     1     1                         A=C,C=B
T0860TS203_1o__subdimer_A_C  T0860TS203_1o__subdimer_B_C  1     2     1                         B=C,C=A

####################################################################

